SOURCE-LINKED INTELLIGENCE

Catena: A Comprehensive Software Suite for Large-Scale Connectomics

arXiv · AI, language, vision and robotics · article · Sep 18, 2026 · UTC

The gold standard datasets for mapping connectomes are electron microscopy volumes of densely labeled neural tissue at nanometer resolution. Yet reconstructing and proofreading neuronal arbors and annotating all synapses requires pipelining multiple software tools that are often fragmented, inconsistently maintained, or proprietary, hindering reproducibility and automation. Here, we introduce Catena, an open-source, comprehensive, developer-centric software suite for connectomics that integrates modules for 3D neuron and organelle segmentation, synapse detection, microtubule tracking, and neur

Read original source ↗ Open in workspace

recordType

paper

region

Global